NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,496.1 |
| Mean read quality |
11.5 |
| Median read length |
3,390.0 |
| Median read quality |
12.5 |
| Number of reads |
4,821.0 |
| Read length N50 |
3,625.0 |
| STDEV read length |
1,060.8 |
| Total bases |
16,854,780.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4821 (100.0%) 16.9Mb |
| >Q7 |
4821 (100.0%) 16.9Mb |
| >Q10 |
4368 (90.6%) 15.3Mb |
| >Q12 |
3017 (62.6%) 10.7Mb |
| >Q15 |
119 (2.5%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (2354) |
| 2 |
16.9 (4060) |
| 3 |
16.7 (3371) |
| 4 |
16.6 (3401) |
| 5 |
16.6 (2202) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13869 (13.1) |
| 2 |
11068 (10.2) |
| 3 |
10634 (8.8) |
| 4 |
10320 (13.2) |
| 5 |
9876 (9.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot