NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,656.8 |
| Mean read quality |
11.3 |
| Median read length |
3,503.0 |
| Median read quality |
12.3 |
| Number of reads |
3,895.0 |
| Read length N50 |
3,794.0 |
| STDEV read length |
1,068.8 |
| Total bases |
14,243,385.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3895 (100.0%) 14.2Mb |
| >Q7 |
3895 (100.0%) 14.2Mb |
| >Q10 |
3508 (90.1%) 12.8Mb |
| >Q12 |
2234 (57.4%) 8.2Mb |
| >Q15 |
31 (0.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (3193) |
| 2 |
15.9 (3989) |
| 3 |
15.8 (3062) |
| 4 |
15.8 (3246) |
| 5 |
15.8 (1756) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11475 (10.4) |
| 2 |
10879 (10.6) |
| 3 |
9751 (12.0) |
| 4 |
8735 (14.5) |
| 5 |
8588 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot