NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,424.3 |
| Mean read quality |
11.5 |
| Median read length |
3,353.0 |
| Median read quality |
12.6 |
| Number of reads |
11,430.0 |
| Read length N50 |
3,744.0 |
| STDEV read length |
1,361.6 |
| Total bases |
39,139,852.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11430 (100.0%) 39.1Mb |
| >Q7 |
11430 (100.0%) 39.1Mb |
| >Q10 |
10162 (88.9%) 34.7Mb |
| >Q12 |
7306 (63.9%) 25.0Mb |
| >Q15 |
260 (2.3%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (2527) |
| 2 |
16.9 (3314) |
| 3 |
16.8 (2658) |
| 4 |
16.8 (1600) |
| 5 |
16.6 (2156) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15630 (14.3) |
| 2 |
12447 (9.0) |
| 3 |
12395 (12.3) |
| 4 |
12395 (13.3) |
| 5 |
11831 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot