NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,616.8 |
| Mean read quality |
12.1 |
| Median read length |
3,526.0 |
| Median read quality |
13.2 |
| Number of reads |
918.0 |
| Read length N50 |
3,807.0 |
| STDEV read length |
1,183.2 |
| Total bases |
3,320,229.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
918 (100.0%) 3.3Mb |
| >Q7 |
918 (100.0%) 3.3Mb |
| >Q10 |
849 (92.5%) 3.1Mb |
| >Q12 |
699 (76.1%) 2.6Mb |
| >Q15 |
106 (11.5%) 0.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (3419) |
| 2 |
17.1 (3885) |
| 3 |
16.8 (4593) |
| 4 |
16.7 (3975) |
| 5 |
16.7 (4659) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13267 (12.5) |
| 2 |
8640 (12.4) |
| 3 |
8495 (10.4) |
| 4 |
8445 (14.1) |
| 5 |
8329 (16.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot