NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,630.8 |
| Mean read quality |
11.2 |
| Median read length |
3,550.0 |
| Median read quality |
12.2 |
| Number of reads |
2,662.0 |
| Read length N50 |
3,788.0 |
| STDEV read length |
984.7 |
| Total bases |
9,665,289.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
2662 (100.0%) 9.7Mb |
| >Q7 |
2662 (100.0%) 9.7Mb |
| >Q10 |
2379 (89.4%) 8.7Mb |
| >Q12 |
1451 (54.5%) 5.3Mb |
| >Q15 |
11 (0.4%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.1 (2873) |
| 2 |
16.0 (5189) |
| 3 |
16.0 (4479) |
| 4 |
15.9 (3308) |
| 5 |
15.5 (3287) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10046 (13.2) |
| 2 |
9857 (8.4) |
| 3 |
8456 (10.2) |
| 4 |
8356 (14.4) |
| 5 |
7768 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot