NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,441.8 |
| Mean read quality |
11.6 |
| Median read length |
3,347.0 |
| Median read quality |
12.5 |
| Number of reads |
8,488.0 |
| Read length N50 |
3,581.0 |
| STDEV read length |
957.6 |
| Total bases |
29,214,087.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8488 (100.0%) 29.2Mb |
| >Q7 |
8488 (100.0%) 29.2Mb |
| >Q10 |
7970 (93.9%) 27.5Mb |
| >Q12 |
5469 (64.4%) 19.0Mb |
| >Q15 |
134 (1.6%) 0.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.7 (2604) |
| 2 |
17.1 (3152) |
| 3 |
16.7 (3312) |
| 4 |
16.6 (3611) |
| 5 |
16.4 (2605) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12718 (11.8) |
| 2 |
12541 (11.6) |
| 3 |
10101 (11.9) |
| 4 |
8900 (10.7) |
| 5 |
8715 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot