NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,134.4 |
| Mean read quality |
10.8 |
| Median read length |
3,047.0 |
| Median read quality |
11.8 |
| Number of reads |
4,445.0 |
| Read length N50 |
3,265.0 |
| STDEV read length |
889.2 |
| Total bases |
13,932,417.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4445 (100.0%) 13.9Mb |
| >Q7 |
4445 (100.0%) 13.9Mb |
| >Q10 |
3797 (85.4%) 12.0Mb |
| >Q12 |
1919 (43.2%) 6.1Mb |
| >Q15 |
14 (0.3%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.2 (3212) |
| 2 |
15.8 (2036) |
| 3 |
15.7 (3279) |
| 4 |
15.7 (2954) |
| 5 |
15.6 (2801) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12019 (12.2) |
| 2 |
8445 (12.1) |
| 3 |
8060 (11.8) |
| 4 |
7967 (9.1) |
| 5 |
7546 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot