NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,736.7 |
| Mean read quality |
11.4 |
| Median read length |
3,648.0 |
| Median read quality |
12.4 |
| Number of reads |
643.0 |
| Read length N50 |
3,984.0 |
| STDEV read length |
1,093.1 |
| Total bases |
2,402,727.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
643 (100.0%) 2.4Mb |
| >Q7 |
643 (100.0%) 2.4Mb |
| >Q10 |
572 (89.0%) 2.2Mb |
| >Q12 |
402 (62.5%) 1.5Mb |
| >Q15 |
16 (2.5%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.6 (3777) |
| 2 |
15.5 (4110) |
| 3 |
15.4 (4947) |
| 4 |
15.4 (6136) |
| 5 |
15.3 (2477) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7108 (11.4) |
| 2 |
7083 (11.6) |
| 3 |
6950 (9.9) |
| 4 |
6934 (13.7) |
| 5 |
6845 (11.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot