NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,597.0 |
| Mean read quality |
11.2 |
| Median read length |
2,518.0 |
| Median read quality |
12.2 |
| Number of reads |
20,868.0 |
| Read length N50 |
3,106.0 |
| STDEV read length |
1,343.6 |
| Total bases |
54,194,184.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20868 (100.0%) 54.2Mb |
| >Q7 |
20868 (100.0%) 54.2Mb |
| >Q10 |
18160 (87.0%) 47.1Mb |
| >Q12 |
11608 (55.6%) 30.8Mb |
| >Q15 |
320 (1.5%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.0 (3270) |
| 2 |
16.8 (1642) |
| 3 |
16.8 (2008) |
| 4 |
16.5 (5081) |
| 5 |
16.5 (2604) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16355 (10.5) |
| 2 |
14708 (9.4) |
| 3 |
13853 (12.9) |
| 4 |
13778 (12.8) |
| 5 |
13036 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot