NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,531.6 |
| Mean read quality |
11.8 |
| Median read length |
3,413.0 |
| Median read quality |
12.8 |
| Number of reads |
34,693.0 |
| Read length N50 |
3,634.0 |
| STDEV read length |
918.8 |
| Total bases |
122,523,439.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
34693 (100.0%) 122.5Mb |
| >Q7 |
34693 (100.0%) 122.5Mb |
| >Q10 |
32648 (94.1%) 115.6Mb |
| >Q12 |
24073 (69.4%) 85.8Mb |
| >Q15 |
1084 (3.1%) 3.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (3410) |
| 2 |
17.7 (3228) |
| 3 |
17.5 (4470) |
| 4 |
17.4 (5684) |
| 5 |
17.3 (2931) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10550 (13.3) |
| 2 |
10495 (11.6) |
| 3 |
10264 (11.5) |
| 4 |
9756 (11.1) |
| 5 |
9717 (11.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot