NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,590.7 |
| Mean read quality |
12.0 |
| Median read length |
2,507.0 |
| Median read quality |
13.1 |
| Number of reads |
5,233.0 |
| Read length N50 |
2,715.0 |
| STDEV read length |
883.7 |
| Total bases |
13,556,990.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
5233 (100.0%) 13.6Mb |
| >Q7 |
5233 (100.0%) 13.6Mb |
| >Q10 |
4800 (91.7%) 12.4Mb |
| >Q12 |
3901 (74.5%) 10.2Mb |
| >Q15 |
440 (8.4%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.3 (1853) |
| 2 |
17.4 (3448) |
| 3 |
17.3 (2941) |
| 4 |
17.3 (1629) |
| 5 |
17.1 (2826) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12969 (9.5) |
| 2 |
12430 (13.6) |
| 3 |
11509 (7.8) |
| 4 |
8786 (11.3) |
| 5 |
8555 (9.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot