NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,686.7 |
| Mean read quality |
12.2 |
| Median read length |
2,682.0 |
| Median read quality |
13.2 |
| Number of reads |
751.0 |
| Read length N50 |
2,994.0 |
| STDEV read length |
1,014.0 |
| Total bases |
2,017,741.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
751 (100.0%) 2.0Mb |
| >Q7 |
751 (100.0%) 2.0Mb |
| >Q10 |
711 (94.7%) 1.9Mb |
| >Q12 |
558 (74.3%) 1.5Mb |
| >Q15 |
56 (7.5%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (3045) |
| 2 |
16.6 (3390) |
| 3 |
16.5 (4355) |
| 4 |
16.4 (2608) |
| 5 |
16.3 (2596) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
6776 (13.5) |
| 2 |
6394 (11.9) |
| 3 |
6296 (13.4) |
| 4 |
5622 (12.7) |
| 5 |
5503 (9.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot