NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,868.9 |
| Mean read quality |
13.1 |
| Median read length |
3,776.0 |
| Median read quality |
14.3 |
| Number of reads |
25,379.0 |
| Read length N50 |
4,007.0 |
| STDEV read length |
983.0 |
| Total bases |
98,188,603.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25379 (100.0%) 98.2Mb |
| >Q7 |
25379 (100.0%) 98.2Mb |
| >Q10 |
24413 (96.2%) 94.6Mb |
| >Q12 |
21870 (86.2%) 85.0Mb |
| >Q15 |
8956 (35.3%) 35.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
20.3 (3407) |
| 2 |
20.0 (4714) |
| 3 |
20.0 (4292) |
| 4 |
19.9 (4443) |
| 5 |
19.8 (5121) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11695 (15.7) |
| 2 |
11476 (13.8) |
| 3 |
11384 (14.5) |
| 4 |
11319 (10.9) |
| 5 |
10889 (16.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot