NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,067.8 |
| Mean read quality |
11.8 |
| Median read length |
3,967.0 |
| Median read quality |
12.9 |
| Number of reads |
3,389.0 |
| Read length N50 |
4,156.0 |
| STDEV read length |
991.6 |
| Total bases |
13,785,648.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3389 (100.0%) 13.8Mb |
| >Q7 |
3389 (100.0%) 13.8Mb |
| >Q10 |
3111 (91.8%) 12.6Mb |
| >Q12 |
2381 (70.3%) 9.8Mb |
| >Q15 |
141 (4.2%) 0.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.1 (3917) |
| 2 |
16.7 (4192) |
| 3 |
16.4 (3093) |
| 4 |
16.3 (4673) |
| 5 |
16.2 (4023) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12842 (13.9) |
| 2 |
11708 (9.3) |
| 3 |
11658 (14.6) |
| 4 |
10269 (14.7) |
| 5 |
8787 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot