NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,511.3 |
| Mean read quality |
11.4 |
| Median read length |
3,368.5 |
| Median read quality |
12.2 |
| Number of reads |
1,076.0 |
| Read length N50 |
3,623.0 |
| STDEV read length |
1,046.5 |
| Total bases |
3,778,133.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1076 (100.0%) 3.8Mb |
| >Q7 |
1076 (100.0%) 3.8Mb |
| >Q10 |
984 (91.4%) 3.5Mb |
| >Q12 |
611 (56.8%) 2.2Mb |
| >Q15 |
26 (2.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (3749) |
| 2 |
16.2 (2438) |
| 3 |
16.1 (4413) |
| 4 |
16.0 (4435) |
| 5 |
15.9 (2518) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10083 (12.2) |
| 2 |
9702 (12.5) |
| 3 |
8476 (13.7) |
| 4 |
8001 (12.3) |
| 5 |
7477 (12.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot