NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,408.3 |
| Mean read quality |
11.8 |
| Median read length |
3,353.0 |
| Median read quality |
12.8 |
| Number of reads |
4,323.0 |
| Read length N50 |
3,544.0 |
| STDEV read length |
868.3 |
| Total bases |
14,734,023.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
4323 (100.0%) 14.7Mb |
| >Q7 |
4323 (100.0%) 14.7Mb |
| >Q10 |
4003 (92.6%) 13.6Mb |
| >Q12 |
2919 (67.5%) 10.0Mb |
| >Q15 |
232 (5.4%) 0.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.3 (2614) |
| 2 |
16.8 (3760) |
| 3 |
16.7 (2800) |
| 4 |
16.7 (2799) |
| 5 |
16.4 (2024) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10920 (13.0) |
| 2 |
9590 (14.5) |
| 3 |
8964 (11.2) |
| 4 |
8639 (12.1) |
| 5 |
8308 (12.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot