NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,582.7 |
| Mean read quality |
10.5 |
| Median read length |
3,445.5 |
| Median read quality |
11.6 |
| Number of reads |
6,766.0 |
| Read length N50 |
3,856.0 |
| STDEV read length |
1,349.5 |
| Total bases |
24,240,824.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6766 (100.0%) 24.2Mb |
| >Q7 |
6766 (100.0%) 24.2Mb |
| >Q10 |
5391 (79.7%) 19.5Mb |
| >Q12 |
2602 (38.5%) 9.4Mb |
| >Q15 |
13 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.6 (3555) |
| 2 |
15.7 (6082) |
| 3 |
15.6 (2790) |
| 4 |
15.5 (3713) |
| 5 |
15.4 (2858) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14716 (10.6) |
| 2 |
14354 (12.8) |
| 3 |
14172 (9.1) |
| 4 |
13168 (13.9) |
| 5 |
12677 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot