NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,127.4 |
| Mean read quality |
11.8 |
| Median read length |
2,995.0 |
| Median read quality |
13.0 |
| Number of reads |
13,331.0 |
| Read length N50 |
3,357.0 |
| STDEV read length |
1,232.5 |
| Total bases |
41,690,830.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
13331 (100.0%) 41.7Mb |
| >Q7 |
13331 (100.0%) 41.7Mb |
| >Q10 |
12136 (91.0%) 37.8Mb |
| >Q12 |
9631 (72.2%) 30.1Mb |
| >Q15 |
578 (4.3%) 1.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (2514) |
| 2 |
17.2 (3184) |
| 3 |
17.2 (2277) |
| 4 |
17.1 (2882) |
| 5 |
17.0 (2444) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16732 (14.5) |
| 2 |
13361 (14.7) |
| 3 |
13124 (13.0) |
| 4 |
13002 (13.9) |
| 5 |
12568 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot