NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,402.1 |
| Mean read quality |
11.2 |
| Median read length |
3,301.0 |
| Median read quality |
12.1 |
| Number of reads |
16,425.0 |
| Read length N50 |
3,548.0 |
| STDEV read length |
1,037.7 |
| Total bases |
55,878,960.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
16425 (100.0%) 55.9Mb |
| >Q7 |
16425 (100.0%) 55.9Mb |
| >Q10 |
14717 (89.6%) 49.9Mb |
| >Q12 |
8584 (52.3%) 28.7Mb |
| >Q15 |
73 (0.4%) 0.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (2980) |
| 2 |
16.3 (3469) |
| 3 |
16.1 (3753) |
| 4 |
16.1 (2777) |
| 5 |
16.1 (3074) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13909 (9.6) |
| 2 |
12446 (8.8) |
| 3 |
12337 (8.6) |
| 4 |
12131 (8.5) |
| 5 |
11054 (12.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot