NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,566.1 |
| Mean read quality |
12.1 |
| Median read length |
3,460.0 |
| Median read quality |
13.3 |
| Number of reads |
12,970.0 |
| Read length N50 |
3,803.0 |
| STDEV read length |
1,261.5 |
| Total bases |
46,252,822.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
12970 (100.0%) 46.3Mb |
| >Q7 |
12970 (100.0%) 46.3Mb |
| >Q10 |
12052 (92.9%) 42.8Mb |
| >Q12 |
9841 (75.9%) 35.0Mb |
| >Q15 |
1394 (10.7%) 4.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.4 (4103) |
| 2 |
17.9 (3589) |
| 3 |
17.8 (3615) |
| 4 |
17.7 (4196) |
| 5 |
17.6 (3553) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13211 (9.4) |
| 2 |
12535 (13.6) |
| 3 |
12499 (12.2) |
| 4 |
11296 (10.4) |
| 5 |
11081 (15.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot