NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,018.4 |
| Mean read quality |
11.9 |
| Median read length |
2,969.0 |
| Median read quality |
13.0 |
| Number of reads |
7,367.0 |
| Read length N50 |
3,338.0 |
| STDEV read length |
1,191.8 |
| Total bases |
22,236,611.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7367 (100.0%) 22.2Mb |
| >Q7 |
7367 (100.0%) 22.2Mb |
| >Q10 |
6835 (92.8%) 20.6Mb |
| >Q12 |
5558 (75.4%) 16.8Mb |
| >Q15 |
306 (4.2%) 0.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (4586) |
| 2 |
16.8 (2082) |
| 3 |
16.6 (2840) |
| 4 |
16.5 (2167) |
| 5 |
16.5 (723) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10402 (13.9) |
| 2 |
10257 (12.9) |
| 3 |
10094 (14.2) |
| 4 |
10058 (13.1) |
| 5 |
9574 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot