NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,187.3 |
| Mean read quality |
13.2 |
| Median read length |
4,081.0 |
| Median read quality |
14.2 |
| Number of reads |
7,210.0 |
| Read length N50 |
4,469.0 |
| STDEV read length |
1,314.5 |
| Total bases |
30,190,157.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7210 (100.0%) 30.2Mb |
| >Q7 |
7210 (100.0%) 30.2Mb |
| >Q10 |
7093 (98.4%) 29.7Mb |
| >Q12 |
6406 (88.8%) 26.9Mb |
| >Q15 |
2010 (27.9%) 8.4Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (4827) |
| 2 |
18.5 (3092) |
| 3 |
18.5 (5227) |
| 4 |
18.3 (3779) |
| 5 |
18.3 (4131) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12121 (14.1) |
| 2 |
11684 (11.1) |
| 3 |
11451 (15.2) |
| 4 |
10945 (12.1) |
| 5 |
10361 (15.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot