NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,497.9 |
| Mean read quality |
11.9 |
| Median read length |
3,368.0 |
| Median read quality |
12.8 |
| Number of reads |
947.0 |
| Read length N50 |
3,614.0 |
| STDEV read length |
1,000.7 |
| Total bases |
3,312,478.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
947 (100.0%) 3.3Mb |
| >Q7 |
947 (100.0%) 3.3Mb |
| >Q10 |
899 (94.9%) 3.2Mb |
| >Q12 |
686 (72.4%) 2.4Mb |
| >Q15 |
39 (4.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.5 (3721) |
| 2 |
16.2 (3821) |
| 3 |
16.1 (4124) |
| 4 |
16.1 (4086) |
| 5 |
16.0 (4398) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8716 (14.3) |
| 2 |
8352 (12.4) |
| 3 |
7601 (12.6) |
| 4 |
7497 (13.5) |
| 5 |
7465 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot