NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,227.0 |
| Mean read quality |
11.5 |
| Median read length |
3,924.0 |
| Median read quality |
12.5 |
| Number of reads |
490.0 |
| Read length N50 |
4,374.0 |
| STDEV read length |
1,737.9 |
| Total bases |
2,071,229.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
490 (100.0%) 2.1Mb |
| >Q7 |
490 (100.0%) 2.1Mb |
| >Q10 |
448 (91.4%) 1.9Mb |
| >Q12 |
312 (63.7%) 1.3Mb |
| >Q15 |
6 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (3148) |
| 2 |
15.7 (3138) |
| 3 |
15.2 (2903) |
| 4 |
15.2 (3748) |
| 5 |
15.1 (2919) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
17340 (8.4) |
| 2 |
15974 (13.1) |
| 3 |
12970 (9.5) |
| 4 |
10468 (13.5) |
| 5 |
10422 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot