NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,715.4 |
| Mean read quality |
11.0 |
| Median read length |
2,568.5 |
| Median read quality |
12.2 |
| Number of reads |
162.0 |
| Read length N50 |
3,478.0 |
| STDEV read length |
1,581.0 |
| Total bases |
439,887.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
162 (100.0%) 0.4Mb |
| >Q7 |
162 (100.0%) 0.4Mb |
| >Q10 |
135 (83.3%) 0.4Mb |
| >Q12 |
87 (53.7%) 0.3Mb |
| >Q15 |
2 (1.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.3 (2387) |
| 2 |
15.1 (2151) |
| 3 |
14.1 (1106) |
| 4 |
14.0 (3698) |
| 5 |
14.0 (1524) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11006 (12.4) |
| 2 |
7727 (12.7) |
| 3 |
6395 (12.3) |
| 4 |
5694 (8.5) |
| 5 |
5452 (10.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot