NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,417.6 |
| Mean read quality |
12.4 |
| Median read length |
3,350.5 |
| Median read quality |
13.4 |
| Number of reads |
11,806.0 |
| Read length N50 |
3,567.0 |
| STDEV read length |
954.7 |
| Total bases |
40,348,135.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11806 (100.0%) 40.3Mb |
| >Q7 |
11806 (100.0%) 40.3Mb |
| >Q10 |
11194 (94.8%) 38.3Mb |
| >Q12 |
9324 (79.0%) 31.9Mb |
| >Q15 |
1967 (16.7%) 6.8Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.8 (4337) |
| 2 |
18.8 (3417) |
| 3 |
18.7 (3936) |
| 4 |
18.7 (3530) |
| 5 |
18.7 (3090) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
15263 (12.4) |
| 2 |
12677 (12.4) |
| 3 |
12578 (9.5) |
| 4 |
10744 (8.8) |
| 5 |
9752 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot