NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,947.2 |
| Mean read quality |
12.4 |
| Median read length |
3,863.0 |
| Median read quality |
13.5 |
| Number of reads |
6,424.0 |
| Read length N50 |
4,061.0 |
| STDEV read length |
935.3 |
| Total bases |
25,357,131.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
6424 (100.0%) 25.4Mb |
| >Q7 |
6424 (100.0%) 25.4Mb |
| >Q10 |
6132 (95.5%) 24.2Mb |
| >Q12 |
5239 (81.6%) 20.8Mb |
| >Q15 |
654 (10.2%) 2.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (2886) |
| 2 |
17.8 (4730) |
| 3 |
17.7 (3260) |
| 4 |
17.5 (4236) |
| 5 |
17.2 (2592) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10308 (10.7) |
| 2 |
9507 (12.5) |
| 3 |
9322 (13.0) |
| 4 |
9283 (13.4) |
| 5 |
9203 (14.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot