NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,764.6 |
| Mean read quality |
12.1 |
| Median read length |
3,647.0 |
| Median read quality |
13.0 |
| Number of reads |
28,714.0 |
| Read length N50 |
3,856.0 |
| STDEV read length |
932.8 |
| Total bases |
108,097,203.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28714 (100.0%) 108.1Mb |
| >Q7 |
28714 (100.0%) 108.1Mb |
| >Q10 |
27367 (95.3%) 103.2Mb |
| >Q12 |
21357 (74.4%) 80.9Mb |
| >Q15 |
1521 (5.3%) 5.9Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.9 (4079) |
| 2 |
17.9 (3385) |
| 3 |
17.7 (3589) |
| 4 |
17.6 (6546) |
| 5 |
17.5 (4615) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12542 (9.2) |
| 2 |
11220 (13.2) |
| 3 |
11190 (13.0) |
| 4 |
10940 (13.7) |
| 5 |
10716 (15.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot