NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,227.6 |
| Mean read quality |
12.1 |
| Median read length |
3,149.0 |
| Median read quality |
13.2 |
| Number of reads |
497.0 |
| Read length N50 |
3,462.0 |
| STDEV read length |
1,039.6 |
| Total bases |
1,604,127.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
497 (100.0%) 1.6Mb |
| >Q7 |
497 (100.0%) 1.6Mb |
| >Q10 |
464 (93.4%) 1.5Mb |
| >Q12 |
379 (76.3%) 1.2Mb |
| >Q15 |
34 (6.8%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (3007) |
| 2 |
16.4 (2861) |
| 3 |
16.2 (3755) |
| 4 |
16.0 (3680) |
| 5 |
16.0 (3315) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
7323 (9.4) |
| 2 |
6951 (15.1) |
| 3 |
6632 (14.8) |
| 4 |
6579 (10.7) |
| 5 |
6528 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot