NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,157.7 |
| Mean read quality |
12.5 |
| Median read length |
3,069.5 |
| Median read quality |
13.6 |
| Number of reads |
3,036.0 |
| Read length N50 |
3,267.0 |
| STDEV read length |
861.8 |
| Total bases |
9,586,801.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
3036 (100.0%) 9.6Mb |
| >Q7 |
3036 (100.0%) 9.6Mb |
| >Q10 |
2885 (95.0%) 9.1Mb |
| >Q12 |
2426 (79.9%) 7.7Mb |
| >Q15 |
620 (20.4%) 2.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.7 (3680) |
| 2 |
19.5 (2230) |
| 3 |
18.7 (2613) |
| 4 |
18.5 (3475) |
| 5 |
18.4 (2278) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11590 (9.0) |
| 2 |
9307 (13.6) |
| 3 |
8256 (13.9) |
| 4 |
7764 (9.1) |
| 5 |
7709 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot