NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,147.7 |
| Mean read quality |
13.3 |
| Median read length |
4,002.0 |
| Median read quality |
14.4 |
| Number of reads |
7,749.0 |
| Read length N50 |
4,322.0 |
| STDEV read length |
1,169.9 |
| Total bases |
32,140,210.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
7749 (100.0%) 32.1Mb |
| >Q7 |
7749 (100.0%) 32.1Mb |
| >Q10 |
7604 (98.1%) 31.5Mb |
| >Q12 |
6702 (86.5%) 27.9Mb |
| >Q15 |
2770 (35.7%) 11.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
19.0 (4469) |
| 2 |
19.0 (5778) |
| 3 |
18.7 (3907) |
| 4 |
18.7 (4162) |
| 5 |
18.7 (3511) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14307 (11.6) |
| 2 |
13304 (14.5) |
| 3 |
11826 (11.6) |
| 4 |
11808 (13.8) |
| 5 |
11677 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot