NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,330.4 |
| Mean read quality |
10.2 |
| Median read length |
5,150.0 |
| Median read quality |
11.1 |
| Number of reads |
239.0 |
| Read length N50 |
5,591.0 |
| STDEV read length |
1,474.0 |
| Total bases |
1,273,963.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
239 (100.0%) 1.3Mb |
| >Q7 |
239 (100.0%) 1.3Mb |
| >Q10 |
190 (79.5%) 1.0Mb |
| >Q12 |
51 (21.3%) 0.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (3797) |
| 2 |
13.7 (4292) |
| 3 |
13.3 (6401) |
| 4 |
13.2 (9524) |
| 5 |
13.2 (5591) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10218 (9.6) |
| 2 |
9595 (11.3) |
| 3 |
9524 (13.2) |
| 4 |
9086 (12.2) |
| 5 |
9061 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot