NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,942.8 |
| Mean read quality |
11.2 |
| Median read length |
3,791.0 |
| Median read quality |
12.3 |
| Number of reads |
18,551.0 |
| Read length N50 |
4,069.0 |
| STDEV read length |
1,087.5 |
| Total bases |
73,143,631.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
18551 (100.0%) 73.1Mb |
| >Q7 |
18551 (100.0%) 73.1Mb |
| >Q10 |
16520 (89.1%) 65.3Mb |
| >Q12 |
10741 (57.9%) 42.8Mb |
| >Q15 |
85 (0.5%) 0.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (3922) |
| 2 |
17.1 (3440) |
| 3 |
16.4 (3528) |
| 4 |
16.3 (4953) |
| 5 |
16.3 (3386) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16929 (9.1) |
| 2 |
15379 (12.3) |
| 3 |
11499 (12.6) |
| 4 |
11415 (13.1) |
| 5 |
10816 (12.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot