NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,568.1 |
| Mean read quality |
11.8 |
| Median read length |
5,337.0 |
| Median read quality |
12.7 |
| Number of reads |
19,324.0 |
| Read length N50 |
5,795.0 |
| STDEV read length |
1,616.5 |
| Total bases |
107,598,161.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
19324 (100.0%) 107.6Mb |
| >Q7 |
19324 (100.0%) 107.6Mb |
| >Q10 |
18226 (94.3%) 101.7Mb |
| >Q12 |
13094 (67.8%) 73.4Mb |
| >Q15 |
412 (2.1%) 2.3Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (3676) |
| 2 |
16.9 (5402) |
| 3 |
16.8 (4202) |
| 4 |
16.8 (4424) |
| 5 |
16.8 (4000) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21557 (13.0) |
| 2 |
19442 (13.9) |
| 3 |
17805 (12.7) |
| 4 |
17247 (11.4) |
| 5 |
15456 (12.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot