NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,151.4 |
| Mean read quality |
11.9 |
| Median read length |
4,007.0 |
| Median read quality |
13.0 |
| Number of reads |
20,592.0 |
| Read length N50 |
4,313.0 |
| STDEV read length |
1,119.9 |
| Total bases |
85,484,994.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20592 (100.0%) 85.5Mb |
| >Q7 |
20592 (100.0%) 85.5Mb |
| >Q10 |
19034 (92.4%) 79.1Mb |
| >Q12 |
14791 (71.8%) 61.7Mb |
| >Q15 |
1104 (5.4%) 4.7Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.4 (4049) |
| 2 |
17.3 (5305) |
| 3 |
17.3 (2855) |
| 4 |
17.2 (4231) |
| 5 |
17.1 (4633) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12589 (11.8) |
| 2 |
11736 (13.5) |
| 3 |
11034 (12.0) |
| 4 |
10929 (14.4) |
| 5 |
10585 (13.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot