NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,004.1 |
| Mean read quality |
12.4 |
| Median read length |
3,899.0 |
| Median read quality |
13.5 |
| Number of reads |
9,969.0 |
| Read length N50 |
4,328.0 |
| STDEV read length |
1,413.2 |
| Total bases |
39,917,258.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
9969 (100.0%) 39.9Mb |
| >Q7 |
9969 (100.0%) 39.9Mb |
| >Q10 |
9398 (94.3%) 37.6Mb |
| >Q12 |
7871 (79.0%) 31.6Mb |
| >Q15 |
1409 (14.1%) 5.6Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
18.7 (5509) |
| 2 |
17.9 (3786) |
| 3 |
17.8 (3235) |
| 4 |
17.6 (8060) |
| 5 |
17.6 (3295) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14386 (14.2) |
| 2 |
12949 (13.6) |
| 3 |
12826 (10.4) |
| 4 |
12660 (11.9) |
| 5 |
12555 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot