NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,710.4 |
| Mean read quality |
12.1 |
| Median read length |
4,556.5 |
| Median read quality |
13.0 |
| Number of reads |
20,030.0 |
| Read length N50 |
4,886.0 |
| STDEV read length |
1,297.4 |
| Total bases |
94,349,858.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
20030 (100.0%) 94.3Mb |
| >Q7 |
20030 (100.0%) 94.3Mb |
| >Q10 |
19207 (95.9%) 90.6Mb |
| >Q12 |
15384 (76.8%) 73.0Mb |
| >Q15 |
746 (3.7%) 3.5Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.2 (4400) |
| 2 |
17.2 (3151) |
| 3 |
17.1 (3520) |
| 4 |
16.9 (4678) |
| 5 |
16.9 (5844) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
14283 (12.6) |
| 2 |
14002 (13.9) |
| 3 |
13759 (13.0) |
| 4 |
13219 (14.7) |
| 5 |
12635 (13.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot