NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,078.2 |
| Mean read quality |
11.0 |
| Median read length |
3,979.0 |
| Median read quality |
11.8 |
| Number of reads |
1,917.0 |
| Read length N50 |
4,215.0 |
| STDEV read length |
1,015.9 |
| Total bases |
7,817,830.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1917 (100.0%) 7.8Mb |
| >Q7 |
1917 (100.0%) 7.8Mb |
| >Q10 |
1738 (90.7%) 7.1Mb |
| >Q12 |
844 (44.0%) 3.5Mb |
| >Q15 |
3 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.4 (4144) |
| 2 |
15.2 (3212) |
| 3 |
15.1 (5765) |
| 4 |
15.0 (3559) |
| 5 |
14.7 (4215) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10131 (10.8) |
| 2 |
9928 (11.0) |
| 3 |
8431 (12.6) |
| 4 |
8142 (12.7) |
| 5 |
7980 (12.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot