NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,353.1 |
| Mean read quality |
11.2 |
| Median read length |
5,174.5 |
| Median read quality |
12.1 |
| Number of reads |
550.0 |
| Read length N50 |
5,549.0 |
| STDEV read length |
1,421.2 |
| Total bases |
2,944,205.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
550 (100.0%) 2.9Mb |
| >Q7 |
550 (100.0%) 2.9Mb |
| >Q10 |
498 (90.5%) 2.7Mb |
| >Q12 |
296 (53.8%) 1.6Mb |
| >Q15 |
3 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (7969) |
| 2 |
15.5 (4223) |
| 3 |
15.1 (6444) |
| 4 |
14.9 (6441) |
| 5 |
14.8 (6680) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11056 (10.9) |
| 2 |
10659 (11.8) |
| 3 |
9600 (12.2) |
| 4 |
9319 (8.2) |
| 5 |
9242 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot