NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,131.6 |
| Mean read quality |
11.6 |
| Median read length |
5,010.0 |
| Median read quality |
12.6 |
| Number of reads |
23,408.0 |
| Read length N50 |
5,352.0 |
| STDEV read length |
1,351.2 |
| Total bases |
120,120,281.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
23408 (100.0%) 120.1Mb |
| >Q7 |
23408 (100.0%) 120.1Mb |
| >Q10 |
21845 (93.3%) 112.3Mb |
| >Q12 |
15736 (67.2%) 81.3Mb |
| >Q15 |
237 (1.0%) 1.2Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (6865) |
| 2 |
17.3 (5131) |
| 3 |
16.8 (5974) |
| 4 |
16.6 (6964) |
| 5 |
16.6 (3254) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
16898 (10.8) |
| 2 |
15802 (10.8) |
| 3 |
14776 (10.0) |
| 4 |
13764 (13.0) |
| 5 |
13758 (14.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot