NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,710.2 |
| Mean read quality |
11.0 |
| Median read length |
2,670.0 |
| Median read quality |
11.9 |
| Number of reads |
378.0 |
| Read length N50 |
2,926.0 |
| STDEV read length |
907.4 |
| Total bases |
1,024,437.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
378 (100.0%) 1.0Mb |
| >Q7 |
378 (100.0%) 1.0Mb |
| >Q10 |
319 (84.4%) 0.9Mb |
| >Q12 |
180 (47.6%) 0.5Mb |
| >Q15 |
2 (0.5%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (2123) |
| 2 |
15.0 (3107) |
| 3 |
14.9 (2405) |
| 4 |
14.9 (2997) |
| 5 |
14.8 (1255) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
5965 (12.1) |
| 2 |
5776 (14.0) |
| 3 |
5249 (11.5) |
| 4 |
5194 (13.0) |
| 5 |
5146 (11.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot