NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,304.4 |
| Mean read quality |
11.8 |
| Median read length |
3,202.0 |
| Median read quality |
12.8 |
| Number of reads |
32,849.0 |
| Read length N50 |
3,493.0 |
| STDEV read length |
1,016.8 |
| Total bases |
108,545,022.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
32849 (100.0%) 108.5Mb |
| >Q7 |
32849 (100.0%) 108.5Mb |
| >Q10 |
30555 (93.0%) 101.2Mb |
| >Q12 |
22875 (69.6%) 76.2Mb |
| >Q15 |
1497 (4.6%) 5.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
17.5 (3109) |
| 2 |
17.5 (2010) |
| 3 |
17.5 (2628) |
| 4 |
17.4 (5184) |
| 5 |
17.4 (3063) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
10608 (12.9) |
| 2 |
10104 (14.2) |
| 3 |
9491 (11.4) |
| 4 |
9474 (12.6) |
| 5 |
9207 (13.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot