NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,546.6 |
| Mean read quality |
10.0 |
| Median read length |
523.0 |
| Median read quality |
10.9 |
| Number of reads |
35.0 |
| Read length N50 |
4,123.0 |
| STDEV read length |
1,986.4 |
| Total bases |
54,131.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35 (100.0%) 0.1Mb |
| >Q7 |
35 (100.0%) 0.1Mb |
| >Q10 |
23 (65.7%) 0.0Mb |
| >Q12 |
13 (37.1%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
14.7 (1257) |
| 2 |
14.2 (1350) |
| 3 |
13.6 (242) |
| 4 |
13.5 (551) |
| 5 |
13.4 (4098) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8170 (11.7) |
| 2 |
6715 (12.7) |
| 3 |
4793 (12.6) |
| 4 |
4589 (12.0) |
| 5 |
4123 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot