NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,940.2 |
| Mean read quality |
11.3 |
| Median read length |
3,813.5 |
| Median read quality |
12.1 |
| Number of reads |
1,650.0 |
| Read length N50 |
4,155.0 |
| STDEV read length |
1,137.7 |
| Total bases |
6,501,323.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1650 (100.0%) 6.5Mb |
| >Q7 |
1650 (100.0%) 6.5Mb |
| >Q10 |
1500 (90.9%) 5.9Mb |
| >Q12 |
888 (53.8%) 3.5Mb |
| >Q15 |
23 (1.4%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.0 (2785) |
| 2 |
15.9 (3312) |
| 3 |
15.9 (2824) |
| 4 |
15.9 (4673) |
| 5 |
15.7 (2499) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8510 (12.0) |
| 2 |
8285 (10.0) |
| 3 |
8177 (13.4) |
| 4 |
8126 (10.3) |
| 5 |
7853 (12.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot