NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,353.2 |
| Mean read quality |
10.5 |
| Median read length |
3,293.0 |
| Median read quality |
11.2 |
| Number of reads |
11,974.0 |
| Read length N50 |
3,645.0 |
| STDEV read length |
1,159.3 |
| Total bases |
40,151,784.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
11974 (100.0%) 40.2Mb |
| >Q7 |
11974 (100.0%) 40.2Mb |
| >Q10 |
10233 (85.5%) 34.3Mb |
| >Q12 |
2589 (21.6%) 8.3Mb |
| >Q15 |
2 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.3 (3601) |
| 2 |
15.1 (3842) |
| 3 |
15.0 (2401) |
| 4 |
14.8 (3004) |
| 5 |
14.8 (2482) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
12633 (11.3) |
| 2 |
11174 (11.0) |
| 3 |
11022 (10.6) |
| 4 |
10985 (11.1) |
| 5 |
10746 (10.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot