NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,906.6 |
| Mean read quality |
10.9 |
| Median read length |
2,830.5 |
| Median read quality |
11.8 |
| Number of reads |
182.0 |
| Read length N50 |
3,038.0 |
| STDEV read length |
786.4 |
| Total bases |
528,997.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
182 (100.0%) 0.5Mb |
| >Q7 |
182 (100.0%) 0.5Mb |
| >Q10 |
163 (89.6%) 0.5Mb |
| >Q12 |
73 (40.1%) 0.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.8 (3441) |
| 2 |
13.8 (1807) |
| 3 |
13.8 (2688) |
| 4 |
13.7 (1917) |
| 5 |
13.7 (1976) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
4987 (12.2) |
| 2 |
4955 (11.8) |
| 3 |
4771 (10.8) |
| 4 |
4567 (10.3) |
| 5 |
4514 (12.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot