NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,371.7 |
| Mean read quality |
11.4 |
| Median read length |
5,255.0 |
| Median read quality |
12.3 |
| Number of reads |
1,895.0 |
| Read length N50 |
5,562.0 |
| STDEV read length |
1,440.9 |
| Total bases |
10,179,336.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
1895 (100.0%) 10.2Mb |
| >Q7 |
1895 (100.0%) 10.2Mb |
| >Q10 |
1763 (93.0%) 9.5Mb |
| >Q12 |
1100 (58.0%) 6.0Mb |
| >Q15 |
20 (1.1%) 0.1Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.8 (4518) |
| 2 |
16.0 (7072) |
| 3 |
15.8 (7472) |
| 4 |
15.6 (3807) |
| 5 |
15.5 (3231) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
13101 (11.8) |
| 2 |
12737 (11.0) |
| 3 |
11487 (13.0) |
| 4 |
11431 (11.9) |
| 5 |
10709 (13.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot