NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,940.0 |
| Mean read quality |
11.0 |
| Median read length |
5,975.0 |
| Median read quality |
11.9 |
| Number of reads |
349.0 |
| Read length N50 |
6,263.0 |
| STDEV read length |
1,677.1 |
| Total bases |
2,073,074.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
349 (100.0%) 2.1Mb |
| >Q7 |
349 (100.0%) 2.1Mb |
| >Q10 |
302 (86.5%) 1.8Mb |
| >Q12 |
163 (46.7%) 1.0Mb |
| >Q15 |
7 (2.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
15.9 (5219) |
| 2 |
15.4 (6561) |
| 3 |
15.3 (5143) |
| 4 |
15.3 (4224) |
| 5 |
15.1 (6606) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
11553 (11.3) |
| 2 |
10292 (12.7) |
| 3 |
10290 (10.8) |
| 4 |
10289 (13.7) |
| 5 |
10162 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot