NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
1,163.3 |
| Mean read quality |
9.5 |
| Median read length |
704.0 |
| Median read quality |
10.1 |
| Number of reads |
8,140.0 |
| Read length N50 |
1,620.0 |
| STDEV read length |
1,249.6 |
| Total bases |
9,468,863.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
8140 (100.0%) 9.5Mb |
| >Q7 |
8140 (100.0%) 9.5Mb |
| >Q10 |
4231 (52.0%) 6.4Mb |
| >Q12 |
995 (12.2%) 3.0Mb |
| >Q15 |
14 (0.2%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
16.7 (3417) |
| 2 |
16.2 (2527) |
| 3 |
15.7 (2685) |
| 4 |
15.5 (4494) |
| 5 |
15.4 (1973) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
8196 (13.8) |
| 2 |
7684 (12.2) |
| 3 |
7633 (12.9) |
| 4 |
7621 (11.7) |
| 5 |
7616 (13.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot