NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,516.0 |
| Mean read quality |
9.9 |
| Median read length |
3,277.0 |
| Median read quality |
10.5 |
| Number of reads |
24.0 |
| Read length N50 |
3,750.0 |
| STDEV read length |
2,057.1 |
| Total bases |
84,383.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24 (100.0%) 0.1Mb |
| >Q7 |
24 (100.0%) 0.1Mb |
| >Q10 |
15 (62.5%) 0.1Mb |
| >Q12 |
3 (12.5%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (2446) |
| 2 |
12.4 (3438) |
| 3 |
12.3 (6024) |
| 4 |
11.8 (3116) |
| 5 |
11.7 (7594) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
9651 (11.6) |
| 2 |
7594 (11.7) |
| 3 |
6241 (9.1) |
| 4 |
6024 (12.3) |
| 5 |
4628 (10.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot